如何使用不同范围的栅格创建栅格砖?

时间:2013-12-22 20:07:55

标签: r stack crop raster resampling

我是 R 的新手,所以这个问题非常基础,但我一直在努力解决这个问题,找不到有效的解决方案。我想从同一区域的一些地图中创建一个栅格砖。 它们以HDF-EOS格式下载,我使用 Modis重投影工具将其转换为.tif

生成的栅格具有相同的投影,但其范围,分辨率和原点不同。

我尝试了几种方法,总结如下:

  1. 手动定义子集范围并对所有栅格进行子集化。然后尝试使用子集栅格制作砖块

  2. 重新采样栅格,为它们提供相同数量的列和行。理想情况下,这将确保栅格单元对齐并可放入栅格砖中。此选项创建了一个块,其中栅格没有值,它们是空的。

  3. 我想知道我应该遵循什么概念来纠正程度。创建一个空栅格是否正确(有效),我将在后面用导入的栅格图像的值填充它?你能看出我弄错了吗? 如果它是相关的,我正在使用 Mac OSX版本10.9.1 ,并使用 rgdal版本0.8-14

    任何帮助将非常感谢!

    三江源

    我在这里添加了我一直在使用的代码:

    # .tif files have been creating using the Modis Reprojection Tool. Input
    # files used for this Tool was LANDSAT HDF-EOS imagery.
    
    library(raster)
    library(rgdal)
    
    setwd()=getwd()
    
    # Download the files from dropbox:
    dl_from_dropbox <- function(x, key) {
      require(RCurl)
      bin <- getBinaryURL(paste0("https://dl.dropboxusercontent.com/s/", key, "/", x),
                          ssl.verifypeer = FALSE)
      con <- file(x, open = "wb")
      writeBin(bin, con)
      close(con)
      message(noquote(paste(x, "read into", getwd())))
    }
    dl_from_dropbox("lndsr.LT52210611985245CUB00-vi.NDVI.tif", "qb1bap9rghwivwy")
    dl_from_dropbox("lndsr.LT52210611985309CUB00-vi.NDVI.tif", "sbhcffotirwnnc6")
    dl_from_dropbox("lndsr.LT52210611987283CUB00-vi.NDVI.tif", "2zrkoo00ngigfzm")
    
    
    
    # Create three rasters
    tif1 <- "lndsr.LT52210611985245CUB00-vi.NDVI.tif"
    tif2 <- "lndsr.LT52210611985309CUB00-vi.NDVI.tif"
    tif3 <- "lndsr.LT52210611987283CUB00-vi.NDVI.tif"
    
    r1 <- raster(tif1, values=TRUE)
    r2 <- raster(tif2, band=1, values=TRUE)
    r3 <- raster(tif3, band=1, values=TRUE)
    
    ### Display their properties
    # projection is identical for the three rasters
    projection(r1)
    # "+proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0"
    projection(r2)
    projection(r3)
    
    # Extents are different
    extent(r1)
    # class       : Extent 
    # xmin        : -45.85728 
    # xmax        : -43.76855 
    # ymin        : -2.388705 
    # ymax        : -0.5181549
    extent(r2)
    # class       : Extent 
    # xmin        : -45.87077 
    # xmax        : -43.78204 
    # ymin        : -2.388727 
    # ymax        : -0.5208711 
    extent(r3)
    # class       : Extent 
    # xmin        : -45.81952 
    # xmax        : -43.7173 
    # ymin        : -2.405129 
    # ymax        : -0.5154312
    
    # origin differs for all
    origin(r1)
    # 5.644590e-05 -8.588605e-05
    origin(r2)
    # 0.0001122091 -0.0001045107
    origin(r3)
    # 6.949976e-05 -5.895945e-05
    
    # resolution differs for r2
    res(r1)
    # 0.0002696872 0.0002696872
    res(r2)
    # 0.0002696875 0.0002696875
    res(r3)
    # 0.0002696872 0.0002696872
    
    
    ## Try different approaches to create a raster brick
    
    # a- define a subset extent, and subset all the rasters
    plot(r1, main="layer1 NDVI")
    de <- drawExtent(show=TRUE, col="red")
    de
    # class       : Extent 
    # xmin        : -45.36159 
    # xmax        : -45.30108 
    # ymin        : -2.002435 
    # ymax        : -1.949501
    e <- extent(-45.36159,-45.30108,-2.002435,-1.949501)
    # Crop each raster with this extent
    r1c <- crop(r1,e)
    r2c <- crop(r2,e)
    r3c <- crop(r3,e)
    # Make raster brick
    rb_a <- brick(r1c,r2c,r3c)
    # Error in compareRaster(x) : different extent
    
    # b- Resample each raster
    s <- raster(nrow=6926, ncol=7735)  # smallest nrow and ncol among r1,r2 and r3
    r1_res <- resample(r1,s, method="ngb")
    r2_res <- resample(r2,s, method="ngb")
    r3_res <- resample(r3,s, method="ngb")
    # Resampling gives for the three rasters the following message:
    # Warning message:
    #   In .local(x, y, ...) :
    #   you are resampling y a raster with a much larger cell size, 
    #   perhaps you should use "aggregate" first
    
    # Make raster brick
    rb_c <- brick(r1, r2, r3)
    # Error in compareRaster(x) : different extent
    

1 个答案:

答案 0 :(得分:10)

这里有一些可以帮到你的东西。因为我没有你的.tif文件只是一些提示。你有没有检查光栅 s 的范围?这是世界的大小,只有那些列的细胞非常大。因此,您必须在重新采样之前为栅格添加一个范围。根据您的信息我做了类似的事情:

# create an extent that includes all your data
e<-extent(-46, -43, -2, -0.6)

# create a raster with that extent, and the number of rows and colums to achive a
# similar resolution as you had before, you might have to do some math here....
# as crs, use the same crs as in your rasters before, from the crs slot
s<-raster(e, nrows=7000, ncols=7800, crs=r1@crs)

# use this raster to reproject your original raster (since your using the same crs,
# resample should work fine
r1<-resample(r1, s, method="ngb")

节日快乐, 本

PS是找到所需范围的更好方法&amp;分辨率:

# dummy extent from your rasters, instead use lapply(raster list, extent)
a<-extent(-45.85728, -43.76855, -2.388705, -0.5181549)
b<-extent(-45.87077, -43.78204, -2.388727, -0.5208711) 
c<-extent(-45.81952 ,-43.7173 , -2.405129 ,-0.5154312)
extent_list<-list(a, b, c)

# make a matrix out of it, each column represents a raster, rows the values
extent_list<-lapply(extent_list, as.matrix)
matrix_extent<-matrix(unlist(extent_list), ncol=length(extent_list)
rownames(matrix_extent)<-c("xmin", "ymin", "xmax", "ymax")

# create an extent with the extrem values of your extent
best_extent<-extent(min(matrix_extent[1,]), max(matrix_extent[3,]),
min(matrix_extent[2,]), max(matrix_extent[4,]))

# the range of your extent in degrees
ranges<-apply(as.matrix(best_extent), 1, diff)
# the resolution of your raster (pick one) or add a desired resolution
reso<-res(r1)
# deviding the range by your desired resolution gives you the number of rows and columns
nrow_ncol<-ranges/reso

# create your raster with the following
s<-raster(best_extent, nrows=nrow_ncol[2], ncols=nrow_ncol[1], crs=r1@crs)