MPI_scatter:无效的缓冲区指针

时间:2015-02-05 06:04:19

标签: c++ multithreading parallel-processing mpi fatal-error

任何人都能说出我做错了什么,因为我收到了这个错误。 代码:

#include<stdio.h>
#include<mpi.h>

void transpose(int ** p, int row, int col)
{
    int ** tempVar;
    tempVar = (int *)malloc(sizeof(int *)* row);
    int i = 0;
    for (; i < row; i++)
    {
        tempVar[i] = (int *)malloc(sizeof (int *)* col);
        int j = 0;
        while (j < col)
        {
            tempVar[i][j] = p[j][i];
            j++;
        }
    }
    p = tempVar;
}
void main(int argc, char * argv[])
{
    int rank, size;
    MPI_Init(argc, argv);
    MPI_Comm_rank(MPI_COMM_WORLD, &rank);
    MPI_Comm_size(MPI_COMM_WORLD, &size);
    int d[] = { 1000, 1000, 1000, 1000, 1000, 1000 };
    int vt[6] = { 1000, 1000, 1000, 1000, 1000, 1000 };
    int ** p;
    p = (int *)malloc(sizeof(int *)* 6);
    int i = 0;
    int row = 6;
    int col = 6;
    while (i < 6)
    {
        p[i] = (int *)malloc(sizeof(int *)* 6);
        /*int j = 0;
        if (rank == 0)
        {
            while (j < 6)
            {
                scanf("%d", p[i][j]);
                j++;
            }
        }*/
        i++;    
    }
    p[0][0] = 0; p[0][1] =2 ; p[0][2] =3 ; p[0][3] =1 ; p[0][4] =1000 ; p[0][5] =1000 ;
    p[1][0] = 2; p[1][1] = 0; p[1][2] = 1000; p[1][3] = 1000; p[1][4] = 5; p[1][5] = 1000;
    p[2][0] = 3; p[2][1] = 1000; p[2][2] = 0; p[2][3] = 1000; p[2][4] = 1000; p[2][5] = 1;

    p[3][0] = 1; p[3][1] = 1000; p[3][2] = 1000; p[3][3] = 0; p[3][4] = 4; p[3][5] = 3;

    p[4][0] = 1000; p[4][1] = 5; p[4][2] = 1000; p[4][3] = 4; p[4][4] = 0; p[4][5] = 2;

    p[5][0] = 1000; p[5][1] = 1000; p[5][2] = 1; p[5][3] = 3; p[5][4] = 2; p[5][5] = 0;
    int smallest;   
    if (rank == 0)
    {
        //transpose(&p , row , col);
        smallest = 0;
        vt[smallest] = smallest;
        //MPI_Bcast();
    }
    int  vt1, d1;
    vt1 = d1 = 0;

    int roww[6];
    MPI_Scatter(vt, 6, MPI_INT, vt1, 1, MPI_INT, 0, MPI_COMM_WORLD);
    MPI_Scatter(d, 6, MPI_INT, d1, 1, MPI_INT, 0, MPI_COMM_WORLD);
    MPI_Scatter(p, row *row, MPI_INT,roww, 6, MPI_INT, 0, MPI_COMM_WORLD);
    i = 0;
    while (i < (row*row)/size)
    {
        MPI_Bcast(smallest, 1, MPI_INT, 0, MPI_COMM_WORLD);
        if (vt1 != rank)
        {
            if (roww[smallest] != 1000)
            {   
                if (d1 > roww[smallest])
                    d1 = roww[smallest];
            }
        }

        MPI_Gather(d1, 1, MPI_INT, d, row, MPI_INT, 0, MPI_COMM_WORLD);
        if (rank == 0)
        {
            smallest = d[0];
            int k = 1;
            int index = 0;
            while (k < 6)
            {
                if (d[k] < smallest)
                {
                    smallest = d[k];
                    index = k;
                }
                k++;
            }
            vt[k] = index;

        }
        MPI_Scatter(vt, 6, MPI_INT, vt1, (row) / size, MPI_INT, 0, MPI_COMM_WORLD);
        MPI_Scatter(d, 6, MPI_INT, d1, (row) / size, MPI_INT, 0, MPI_COMM_WORLD);
i++;

    }
    MPI_Finalize();
}

我得到的错误是

  

致命错误:MPI_Scatter中的致命错误:无效的缓冲区指针,错误堆栈:
  MPI_Scatter(760):MPI_Scatter(sbuf = 0x0085f7ac,scount,MPI_INT,rbuf = 0x0000000,rcount = 1,MPI_INT,root = 0,MPI_COMM_WORLD)失败

1 个答案:

答案 0 :(得分:0)

您提供的代码会编译许多不容忽视的警告,例如:

 passing argument 2 of ‘MPI_Init’ from incompatible pointer type

仔细查看函数原型:如果调用类似int* fun(int* b);的内容,int d;fun(d);可能会失败。如果函数需要指向数据的指针,fun(&d)可能会更好。出现此问题很多次,因为调用了MPI函数。

更多:功能transpose(int ** p)尝试通过p修改p= tempVar。正如@WhozCraig所做的那样,通过int **p;...;transpose(p,...)transpose()函数范围内的p的副本被修改,但不是p。因此,此函数的正确原型是transpose(int ***p,...),调用它的正确方法是int** p;...;transpose(&p,...);

关于内存分配:你找到了一种分配2D数组的方法!但是数据在内存中是不连续的,因为每次分配一个行。如果您打算使用MPI_Scatter()等MPI功能,allocating a contiguous 2D array是正确的方法(more)。

其他建议:在正确的时间调用free()以释放内存并避免内存泄漏。 Do not cast the return of malloc()

这是一段应该与mpicc main.c -o main -Wall很好地编译的代码。选项-Wall启用所有警告。它似乎运行正常,但我没有检查结果是否正确。

#include<stdio.h>
#include<mpi.h>
#include<stdlib.h>

void transpose(int *** p, int row, int col)
{
    int ** tempVar;
    tempVar = malloc(sizeof(int *)* row);
    if (tempVar==NULL){printf("malloc failed\n"); exit (1);}
    tempVar[0] = malloc(sizeof (int )* col*row);
    if (tempVar[0]==NULL){printf("malloc failed\n"); exit (1);}
    int i = 0;
    for (i=0; i < row; i++)
    {
        tempVar[i] = &tempVar[0][col*i];
        int j = 0;
        while (j < col)
        {
            tempVar[i][j] = (*p)[j][i];
            j++;
        }
    }
    free((*p)[0]);
    free(*p);
    *p = tempVar;
}
int main(int argc, char * argv[])
{
    int rank, size;
    MPI_Init(&argc, &argv);
    MPI_Comm_rank(MPI_COMM_WORLD, &rank);
    MPI_Comm_size(MPI_COMM_WORLD, &size);
    int d[] = { 1000, 1000, 1000, 1000, 1000, 1000 };
    int vt[6] = { 1000, 1000, 1000, 1000, 1000, 1000 };
    int ** p;

    int i = 0;
    int row = 6;
    int col = 6;
    p = malloc(sizeof(int *)* row);
    if (p==NULL){printf("malloc failed\n"); exit (1);}
    p[0] = malloc(sizeof(int )* row*col);
    if (p[0]==NULL) {printf("malloc failed\n"); exit (1);}
    while (i < row)
    {
        p[i] = &p[0][i*col];
        /*int j = 0;
        if (rank == 0)
        {
            while (j < 6)
            {
                scanf("%d", p[i][j]);
                j++;
            }
        }*/
        i++;    
    }
    p[0][0] = 0; p[0][1] =2 ; p[0][2] =3 ; p[0][3] =1 ; p[0][4] =1000 ; p[0][5] =1000 ;
    p[1][0] = 2; p[1][1] = 0; p[1][2] = 1000; p[1][3] = 1000; p[1][4] = 5; p[1][5] = 1000;
    p[2][0] = 3; p[2][1] = 1000; p[2][2] = 0; p[2][3] = 1000; p[2][4] = 1000; p[2][5] = 1;

    p[3][0] = 1; p[3][1] = 1000; p[3][2] = 1000; p[3][3] = 0; p[3][4] = 4; p[3][5] = 3;

    p[4][0] = 1000; p[4][1] = 5; p[4][2] = 1000; p[4][3] = 4; p[4][4] = 0; p[4][5] = 2;

    p[5][0] = 1000; p[5][1] = 1000; p[5][2] = 1; p[5][3] = 3; p[5][4] = 2; p[5][5] = 0;
    int smallest;   
    if (rank == 0)
    {
        //transpose(&p , row , col);
        smallest = 0;
        vt[smallest] = smallest;
        //MPI_Bcast();
    }
    int  vt1, d1;
    vt1 = d1 = 0;

    int roww[col];
    MPI_Scatter(vt, 1, MPI_INT, &vt1, 1, MPI_INT, 0, MPI_COMM_WORLD);
    MPI_Scatter(d, 1, MPI_INT, &d1, 1, MPI_INT, 0, MPI_COMM_WORLD);
    MPI_Scatter(&p[0][0], col, MPI_INT,roww, col, MPI_INT, 0, MPI_COMM_WORLD);
    i = 0;
    while (i < (row*row)/size)
    {
        MPI_Bcast(&smallest, 1, MPI_INT, 0, MPI_COMM_WORLD);
        if (vt1 != rank)
        {
            if (roww[smallest] != 1000)
            {   
                if (d1 > roww[smallest])
                    d1 = roww[smallest];
            }
        }

        MPI_Gather(&d1, 1, MPI_INT, d, 1, MPI_INT, 0, MPI_COMM_WORLD);
        if (rank == 0)
        {
            smallest = d[0];
            int k = 1;
            int index = 0;
            while (k < 6)
            {
                if (d[k] < smallest)
                {
                    smallest = d[k];
                    index = k;
                }
                k++;
            }
            vt[k] = index;

        }
        MPI_Scatter(vt, 1, MPI_INT, &vt1, 1, MPI_INT, 0, MPI_COMM_WORLD);
        MPI_Scatter(d, 1, MPI_INT, &d1, 1, MPI_INT, 0, MPI_COMM_WORLD);
        i++;

    }

    free(p[0]);
    free(p);
    MPI_Finalize();
    return 0;
}
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