conda build R软件包由于C编译器而失败

时间:2019-03-21 17:56:29

标签: r gcc conda conda-build

我正在尝试使用rcdd安装一个名为conda build的R软件包,C编译器有问题。请注意,此问题看起来与 Conda build R package fails at C compiler issue on MacOS Mojave但是,由于(i)该问题仍未得到解答,并且(ii)这与其他软件包有关,我认为这不是重复的问题。

我正在使用conda 4.6.8的MacOS Mojave。在具有r-baser-essentials的新conda环境中 安装,我尝试

conda install conda-build
conda skeleton cran --recursive rcdd
conda build r-rcdd

并出现以下错误

* installing *source* package ‘rcdd’ ...
** package ‘rcdd’ successfully unpacked and MD5 sums checked
checking for gcc... x86_64-apple-darwin13.4.0-clang
checking whether the C compiler works... no
configure: error: in `/Users/pjethwa/miniconda3/envs/r_env/conda-bld/r-rcdd_1553173041138/work':
configure: error: C compiler cannot create executables
See `config.log' for more details
ERROR: configuration failed for package ‘rcdd’

config.log文件包含相同的错误消息。当我尝试直接从R进行安装时(即使用install.packages('rcdd')),也会出现相同的错误。我 am 能够使用conda未安装的R版本安装此软件包。该解决方案并不令人满意,因为我想使用rpy2来连接python和R,这似乎要求conda安装R(例如,参见Getting Segmentation fault Core dumped error while importing robjects from rpy2

我的clang / gcc版本是:

(r_env) myusername:~ clang --version
clang version 4.0.1 (tags/RELEASE_401/final)
Target: x86_64-apple-darwin18.2.0
Thread model: posix
InstalledDir: /Users/myusername/miniconda3/envs/r_env/bin    

(r_env) myusername:~ gcc --version
Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 10.0.0 (clang-1000.10.44.4)
Target: x86_64-apple-darwin18.2.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin

0 个答案:

没有答案
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